PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_67050.7
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family E2F/DP
Protein Properties Length: 179aa    MW: 19701.8 Da    PI: 4.7155
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_67050.7genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP74.31.3e-231782171
       E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                  rk+ksL+ll+++f++l+ + + ++v l+++a++L    v  +rRRiYDi+NVLe+++++ +++kn+++w+g
  MLOC_67050.7 17 RKQKSLGLLCSNFVALYDRDDVETVGLDDAARRL---GV--ERRRIYDIVNVLESVGILVRRAKNRYTWIG 82
                  79****************9999************...**..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.6E-261383IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.94E-171681IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013728.6E-291782IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.6E-211882IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
SGSGAAARAC RHHSYSRKQK SLGLLCSNFV ALYDRDDVET VGLDDAARRL GVERRRIYDI  60
VNVLESVGIL VRRAKNRYTW IGFEGVPAAL KELKERTLRE MSGLAPPPEE PSATNVSDDE  120
DEDDKLGDAD GDADSEKLSQ SLDNASDKPD APMCPLRSGM TDQSLSNYFA VPSDHHVMY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A5e-181694385Transcription factor E2F8
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00397DAPTransfer from AT3G48160Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3753580.0AK375358.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3092B12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564010.15e-92PREDICTED: E2F transcription factor-like E2FE
SwissprotQ8LSZ41e-43E2FE_ARATH; E2F transcription factor-like E2FE
TrEMBLM0Y9K91e-130M0Y9K9_HORVD; Uncharacterized protein
STRINGMLOC_67050.11e-110(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.14e-45DP-E2F-like 1